Topics

CI

• A Python project template

Conda

• Getting started with Conda

• Running Jupyter notebooks on the RCS compute service

• Using your Conda environments inside Jupyter

Docker

• Running Docker images using Singularity

Git

• Git shortcuts using aliases

Globus

• Transferring data to and from the Research Data Store

• Sharing data from the Research Data Store

Job management

• Best practices for job scripts

• Array jobs

• Controlling logging for jobs

• Running Jupyter notebooks on the RCS compute service

• RCS compute service utility scripts

• Running long jobs on the RCS compute service

• Compute service job dependencies

Julia

• Running Julia on the RCS compute service

Jupyter

• Web access to the RCS compute service

• Running Julia on the RCS compute service

• Running Jupyter notebooks on the RCS compute service

• Running MATLAB on the RCS compute service

• Using your Conda environments inside Jupyter

• Editing and running your code directly on the RCS compute service

MATLAB

• Running MATLAB in parallel on the RCS compute service

• Running MATLAB on the RCS compute service

Nextflow

• Using Nextflow on the RCS compute service

• Running long jobs on the RCS compute service

Python

• A Python project template

RDS

• Transferring data to and from the Research Data Store

• Sharing data from the Research Data Store

RStudio

• Web access to the RCS compute service

• Editing and running your code directly on the RCS compute service

Singularity

• Running Docker images using Singularity

Snakemake

• Using Snakemake on the RCS compute service

VSCode

• Editing and running your code directly on the RCS compute service